| School Name |
Enrollment |
| Braham High School |
217 |
| St. Agnes High School |
216 |
| Deer River High School |
215 |
| Kimball Area High School |
215 |
| Medford High School |
215 |
| Moose Lake High School |
215 |
| Kingsland High School |
214 |
| Martin County West High School |
214 |
| Southland High School |
212 |
| United South Central High School |
210 |
| Hmong Academy |
210 |
| Lake Crystal-Wellcome Memorial |
209 |
| Wabasha-Kellogg High School |
208 |
| Walker-Hackensack-Akeley H.S. |
207 |
| West Central Area School |
205 |
| Pine River-Backus High School |
205 |
| Minnesota Valley Lutheran |
205 |
| Murray County Central High School |
202 |
| Pillager High School |
200 |
| Blooming Prairie High School |
198 |
| Bethlehem Academy |
195 |
| Goodhue High School |
194 |
| PACT Charter School |
191 |
| East Central High School |
190 |
| Atwater-Cosmos-Grove City H.S. |
190 |
| MACCRAY High School |
188 |
| Mesabi East High School |
186 |
| Royalton High School |
183 |
| Ortonville High School |
183 |
| Belgrade-Brooten-Elrosa H.S. |
178 |
| Springfield High School |
176 |
| St. Croix Preparatory Academy |
176 |
| Saint Clair High School |
175 |
| Red Lake High School |
175 |
| Barnum High School |
174 |
| Maranatha Christian Academy |
173 |
| Legacy Christian Academy |
173 |
| Le Center High School |
173 |
| Fosston High School |
172 |
| Minneapolis North Community H.S. |
171 |
| Academy for Sciences & Agriculture |
168 |
| Harbor City International School |
167 |
| Cook County High School |
166 |
| Janesville-Waldorf-Pemberton H.S. |
164 |
| Menahga High School |
163 |
| Ely High School |
163 |
| St. Paul Preparatory School |
163 |
| Southwest Christian |
163 |
| Sleepy Eye High School |
162 |
| Randolph High School |
161 |
| West Lutheran High School |
161 |
| Great River School |
160 |
| Paladin Academy |
160 |
| Hillcrest Lutheran Academy |
160 |
| Fillmore Central High School |
159 |
| Parkers Prairie High School |
159 |
| Chisholm High School |
159 |
| New York Mills High School |
158 |
| Lake of the Woods H.S. |
158 |
| Adrian High School |
157 |
| Canby High School |
157 |
| Minnesota Transitions Charter School |
157 |
| Buffalo Lake-Hector-Stewart High School |
156 |
| Cass Lake-Bena High School |
156 |
| Blackduck High School |
156 |
| Ada-Borup High School |
156 |
| Ogilvie High School |
155 |
| Lake Park-Audubon |
154 |
| Russell-Tyler-Ruthton High School |
153 |
| New Ulm Cathedral High School |
152 |
| Browerville High School |
151 |
| Lighthouse Academy of Nations |
150 |
| Mankato Loyola High School |
150 |
| Eagle Ridge Academy |
150 |
| Community of Peace Academy |
146 |
| Rushford-Peterson High School |
146 |
| Sebeka High School |
146 |
| Kerkhoven-Murdock-Sunburg H.S. |
145 |
| MetroTech Career Academy |
142 |
| International School of MN (The) |
141 |
| Mahnomen High School |
141 |
| Fulda High School |
140 |
| Madelia High School |
139 |
| Dawson-Boyd High School |
138 |
| Underwood High School |
138 |
| Prairie Seeds Academy |
137 |
| Nevis High School |
136 |
| Minneota High School |
135 |
| Fertile-Beltrami High School |
135 |
| Westbrook-Walnut Grove High School |
135 |
| Wabasso High School |
134 |
| Nashwauk-Keewatin High School |
133 |
| Onamia High School |
133 |
| Renville County West High School |
132 |
| Carlton High School |
132 |
| Lakeview High School |
131 |
| Cleveland High School |
130 |
| Battle Lake High School |
130 |
| Silver Bay (Wm. Kelley) High School |
130 |
| Avalon School |
130 |
| Wheaton High School |
129 |
| Math & Science Academy |
128 |
| North Lakes Academy |
126 |
| Verndale High School |
126 |
| Minnesota Online High School |
125 |
| Upsala High School |
124 |
| Sleepy Eye Saint Mary's High School |
124 |
| Houston High School |
124 |
| Win-E-Mac High School |
122 |
| Red Rock Central High School |
121 |
| Isle High School |
121 |
| Heritage Christian Academy |
120 |
| Waubun High School |
119 |
| Clearbrook-Gonvick High School |
117 |
| Greenbush-Middle River High School |
116 |
| Bethany Academy |
116 |
| Southwest Star Concept H. S. |
116 |
| Warren-Alvarado-Oslo High School |
115 |
| Mountain Iron-Buhl High School |
113 |
| Mountain Lake High School |
111 |
| Bertha-Hewitt High School |
111 |
| Alden-Conger High School |
111 |
| Clinton-Graceville-Beardsley H.S. |
111 |
| Twin Cities Academy High School |
110 |
| Southwest Minnesota Christian |
109 |
| Cedar Mountain High School |
109 |
| Northland High School |
109 |
| Lester Prairie High School |
109 |
| Red Lake Falls High School |
108 |
| South Ridge High School |
107 |
| Glenville-Emmons High School |
106 |
| Marshall County Central H. S. |
106 |
| Park Christian High School |
106 |
| Willow River High School |
103 |
| Sacred Heart High School |
102 |
| Hills-Beaver Creek High School |
98 |
| Stephen-Argyle Central High School |
98 |
| Swanville High School |
97 |
| FAIR School |
96 |
| TrekNorth High School |
95 |
| Norman County East High School |
95 |
| Edgerton High School |
95 |
| Floodwood High School |
94 |
| McGregor High School |
94 |
| Mabel-Canton High School |
93 |
| Lincoln H I High School |
93 |
| Truman High School |
93 |
| Schaeffer Academy |
93 |
| New Century Academy |
91 |
| Lincoln International High School |
91 |
| Northeast Range High School |
91 |
| Nicollet High School |
90 |
| Granada-Huntley-East Chain H.S. |
89 |
| Wrenshall High School |
86 |
| Spring Grove High School |
86 |
| Littlefork-Big Falls High School |
86 |
| North Woods High School |
86 |
| Central Minnesota Christian |
85 |
| Lanesboro High School |
85 |
| Henning High School |
84 |
| Saint Paul Open School |
84 |
| Rochester Off-Campus Charter High School |
83 |
| Cherry High School |
83 |
| Ulen-Hitterdal High School |
82 |
| Holy Trinity High School |
82 |
| LeRoy-Ostrander High School |
81 |
| Kittson Central High School |
80 |
| Grand Meadow High School |
80 |
| Bigfork High School |
78 |
| Fisher High School |
76 |
| Cromwell High School |
74 |
| Hill City High School |
74 |
| Eagle Valley High School |
72 |
| Red Lake County Central |
71 |
| Ashby High School |
70 |
| Hope Academy |
70 |
| Groves Academy |
69 |
| Round Lake-Brewster |
69 |
| Martin Luther High School |
68 |
| Minnesota New Country School |
66 |
| Tri-County High School |
66 |
| Arcadia Charter School |
65 |
| Calvin Christian High School |
65 |
| Norman County West High School |
65 |
| SAGE Academy Charter School |
64 |
| Four Directions Charter School |
63 |
| Brandon High School |
63 |
| Ellsworth High School |
62 |
| Grygla-Gatzke High School |
61 |
| Laporte High School |
61 |
| Saint Cloud Christian School |
61 |
| Lakeview Christian Academy |
60 |
| Rothsay High School |
59 |
| E.C.H.O. Charter School |
57 |
| Butterfield-Odin High School |
57 |
| Hancock High School |
56 |
| Nova Classical Academy |
54 |
| Northome High School |
53 |
| El Colegio Charter School |
51 |
| Kelliher High School |
49 |
| Lyle High School |
49 |
| Bug-O-Nay-Ge-Shig School |
47 |
| Evansville High School |
47 |
| Hope Lutheran High School |
47 |
| Minnesota State Academy for the Deaf |
46 |
| EdVisions Off Campus High School |
45 |
| Face To Face Academy |
44 |
| Badger High School |
44 |
| Austin Pacelli High School |
41 |
| Goodridge High School |
40 |
| Cambridge Christian School |
40 |
| Lancaster High School |
40 |
| Indus High School |
40 |
| Discovery Public School of Faribault |
40 |
| Lake Region Christian School |
40 |
| Chokio-Alberta High School |
38 |
| Climax High School |
37 |
| Christ's Household of Faith |
36 |
| Campbell-Tintah High School |
35 |
| Comfrey High School |
34 |
| Fond du Lac Ojibwe High School |
34 |
| Great River Education Center |
33 |
| Mt. Lake Christian High School |
33 |
| Liberty Classical Academy |
33 |
| Learning for Leadership Charter |
28 |
| Metro Deaf School |
28 |
| Cannon Valley Lutheran |
27 |
| Herman-Norcross High School |
25 |
| St. John Vianney Academy |
25 |
| Faith Christian School |
24 |
| Riverway Learning Community |
22 |
| Minnesota State Academy For The Blind |
22 |
| Mesabi Academy School |
21 |
| New Testament Christian School |
19 |
| El Shaddai School |
18 |
| Community Christian High School |
17 |
| Hendricks H.S. |
15 |
| Harvest Christian School |
12 |
| Holy Family Academy |
10 |
| Destiny Academy |
7 |
| Minisinaakawang Leadership Academy |
7 |
| Sioux Valley Lutheran High School |
6 |